Index

A

add_phase_screen() (in module janssen.optics) amplitude_grating_binary() (in module janssen.optics) angular_spectrum_prop() (in module janssen.prop) annular_aperture() (in module janssen.optics) aplanatic_apodization() (in module janssen.prop)

apply_aberration() (in module janssen.optics) apply_phase_mask() (in module janssen.optics) apply_phase_mask_fn() (in module janssen.optics) astigmatism() (in module janssen.optics) azimuthally_polarized_beam() (in module janssen.models)

B

beam_splitter() (in module janssen.optics) bessel_beam() (in module janssen.models) bessel_j0() (in module janssen.utils)

bessel_jn() (in module janssen.utils) bessel_kv() (in module janssen.utils) biological_cell() (in module janssen.models)

C

calculate_usaf_group_range() (in module janssen.models) circular_aperture() (in module janssen.optics) circular_polarized_beam() (in module janssen.models) coherence_parameterized_loss() (in module janssen.invert) collimated_gaussian() (in module janssen.models) coma() (in module janssen.optics) compute_focal_volume() (in module janssen.prop) compute_fov_and_positions() (in module janssen.invert) compute_phase_from_coeffs() (in module janssen.optics)

converging_gaussian() (in module janssen.models) correct_propagator() (in module janssen.prop) create_bar_triplet() (in module janssen.models) create_element_pattern() (in module janssen.models) create_group_pattern() (in module janssen.models) create_lens_phase() (in module janssen.lenses) create_loss_function() (in module janssen.invert) create_mesh() (in module janssen.utils) create_spatial_grid() (in module janssen.optics)

D

debye_wolf_focus() (in module janssen.prop) defocus() (in module janssen.optics) diffraction_patterns (janssen.invert.MixedStatePtychoData attribute), [1] diffractogram_noscale() (in module janssen.scopes)

digital_zoom() (in module janssen.prop) diverging_gaussian() (in module janssen.models) double_concave_lens() (in module janssen.lenses) double_convex_lens() (in module janssen.lenses) dx (janssen.invert.MixedStatePtychoData attribute), [1]

E

epie_optical() (in module janssen.invert)

F

factorial() (in module janssen.optics) field_intensity() (in module janssen.optics) flatten_params() (in module janssen.utils)

fourier_shift() (in module janssen.utils) fraunhofer_prop() (in module janssen.prop) fraunhofer_prop_scaled() (in module janssen.prop) fresnel_prop() (in module janssen.prop)

G

gaussian_apodizer() (in module janssen.optics) gaussian_apodizer_elliptical() (in module janssen.optics) gaussian_beam() (in module janssen.models) generalized_cylindrical_vector_beam() (in module janssen.models) generate_aberration_nm() (in module janssen.optics) generate_aberration_noll() (in module janssen.optics) generate_usaf_pattern() (in module janssen.models)

get_bar_width_pixels() (in module janssen.models) get_device_count() (in module janssen.utils) get_device_memory_gb() (in module janssen.utils) gn_history() (in module janssen.utils) gn_loss_history() (in module janssen.utils) gn_solve() (in module janssen.utils) gn_step() (in module janssen.utils) gradient_index_material() (in module janssen.models)

H

half_waveplate() (in module janssen.optics) hermite_gaussian() (in module janssen.models)

hessian_matvec() (in module janssen.utils) high_na_focus() (in module janssen.prop)

I

init_simple_epie() (in module janssen.invert)

init_simple_microscope() (in module janssen.invert)

J

janssen module janssen.invert module janssen.lenses module janssen.models module janssen.optics module

janssen.plots module janssen.prop module janssen.scopes module janssen.utils module jt_residual() (in module janssen.utils) jtj_diag() (in module janssen.utils) jtj_matvec() (in module janssen.utils)

L

laguerre_gaussian() (in module janssen.models) layered_material() (in module janssen.models) lens_focal_length() (in module janssen.lenses)

lens_propagation() (in module janssen.prop) lens_thickness_profile() (in module janssen.lenses) linear_interaction() (in module janssen.scopes) linear_polarized_beam() (in module janssen.models)

M

make_mixed_state_ptycho_data() (in module janssen.invert) max_eigenval() (in module janssen.utils) meniscus_lens() (in module janssen.lenses) mirror_reflection() (in module janssen.optics) mixed_state_forward() (in module janssen.invert) mixed_state_forward_single_position() (in module janssen.invert) mixed_state_gradient_step() (in module janssen.invert) mixed_state_loss() (in module janssen.invert) mixed_state_reconstruct() (in module janssen.invert) MixedStatePtychoData (class in janssen.invert)

module janssen janssen.invert janssen.lenses janssen.models janssen.optics janssen.plots janssen.prop janssen.scopes janssen.utils multislice_propagation() (in module janssen.prop)

N

nd_filter() (in module janssen.optics) nm_to_noll() (in module janssen.optics)

noll_to_nm() (in module janssen.optics) normalize_field() (in module janssen.optics)

O

optical_path_length() (in module janssen.prop)

optical_zoom() (in module janssen.prop)

P

phase_grating_blazed_elliptical() (in module janssen.optics) phase_grating_sawtooth() (in module janssen.optics) phase_grating_sine() (in module janssen.optics) phase_rms() (in module janssen.optics) plane_wave() (in module janssen.models) plano_concave_lens() (in module janssen.lenses) plano_convex_lens() (in module janssen.lenses) plot_amplitude() (in module janssen.plots) plot_complex_wavefront() (in module janssen.plots)

plot_intensity() (in module janssen.plots) plot_phase() (in module janssen.plots) polarizer_jones() (in module janssen.optics) positions (janssen.invert.MixedStatePtychoData attribute), [1] prism_phase_ramp() (in module janssen.optics) probe_modes (janssen.invert.MixedStatePtychoData attribute), [1] profile_gn_memory() (in module janssen.invert) propagate_beam() (in module janssen.models) propagate_through_lens() (in module janssen.lenses)

Q

quarter_waveplate() (in module janssen.optics)

R

radially_polarized_beam() (in module janssen.models)

rectangular_aperture() (in module janssen.optics)

S

sample (janssen.invert.MixedStatePtychoData attribute), [1] scalar_focus_for_comparison() (in module janssen.prop) scale_pixel() (in module janssen.optics) sellmeier() (in module janssen.optics) shard_batch() (in module janssen.utils) simple_diffractogram() (in module janssen.scopes) simple_microscope() (in module janssen.scopes) simple_microscope_epie() (in module janssen.invert) simple_microscope_gn() (in module janssen.invert)

simple_microscope_optim() (in module janssen.invert) single_pie_iteration() (in module janssen.invert) single_pie_sequential() (in module janssen.invert) single_pie_vmap() (in module janssen.invert) sinusoidal_wave() (in module janssen.models) spherical_aberration() (in module janssen.optics) spherical_inclusion() (in module janssen.models) supergaussian_apodizer() (in module janssen.optics) supergaussian_apodizer_elliptical() (in module janssen.optics)

T

total_transmit() (in module janssen.prop)

trefoil() (in module janssen.optics)

U

unflatten_params() (in module janssen.utils)

uniform_material() (in module janssen.models)

V

variable_transmission_aperture() (in module janssen.optics)

W

wavelength (janssen.invert.MixedStatePtychoData attribute), [1]

waveplate_jones() (in module janssen.optics) wirtinger_grad() (in module janssen.utils)

X

x_polarized_beam() (in module janssen.models)

Y

y_polarized_beam() (in module janssen.models)

Z

zernike_polynomial() (in module janssen.optics)

zernike_radial() (in module janssen.optics)