Tutorials

This section contains interactive Jupyter notebooks demonstrating how to use Janssen for various applications.

Tutorial Notebooks

• Partial Coherence in Wave Optics
• Part I: Spatial Coherence
• Part II: Temporal Coherence
• Part III: Coherent Mode Decomposition
• Part IV: Differentiable Partial Coherence
• Publication Figure
• Publication Figures
• Create a diffractogram
• Polarization in Wave Optics
• Part I: Jones Calculus
• Part II: Mueller-Stokes Calculus
• Part III: Differentiable Polarization Optics
• Publication Figure
• Wavefronts Tutorial
• Zernike Polynomials Tutorial

Simulated Microscopes

• Simulated Microscopes
  • Simple Microscope Simulation
  • Simple Microscope Simulation - Biological Cells
  • Simple Microscope Simulation - Spherical Inclusions

Note

These notebooks are rendered automatically from the tutorials/ directory. To run them interactively:

1. Clone the repository

2. Navigate to the tutorials/ directory

3. Launch Jupyter: jupyter notebook or jupyter lab

4. Open any notebook to explore the examples